Software
Research Software
Tools developed by our research group
Electrophysiological Feature Extraction Toolbox (ElecFeX)
ElecFeX is an open-source MATLAB toolbox for efficient feature extraction from neural recordings. It offers an intuitive GUI, customizable measurements, batch processing, and formatted output.
Key Features:
- Intuitive graphical user interface
- Customizable electrophysiological measurements
- Batch processing for large datasets
- Formatted output for further analysis
- Extensive documentation and examples
Parametric Characterization of Calcium Signals
This MATLAB-based tool automates the analysis of calcium signals by measuring key features such as onset, amplitude, and decay time while distinguishing oscillatory behavior from stochastic noise.
Key Features:
- Automated detection of calcium transients
- Quantitative parameterization of signal features
- Statistical analysis of calcium dynamics
- Modeling of stochastic calcium signals
- Support for various experimental protocols
Code Repositories
Code accompanying our published research papers
Decoding Heterogeneous Spiking Activities
This repository contains the code to process spiking activities of sensory pyramidal cells and run model simulations for: Akhshi A, et al. (2023) Decoding the relative contributions of extrinsic and intrinsic mechanisms in mediating heterogeneous spiking activities of sensory neurons in vivo using computational modeling.